Programming

  • Python, R, Perl, Bash
  • Git, Docker
  • DBMS (MySQL)
  • Workflow language (WDL, Nextflow, Snakemake)

Cloud & HPC experience

  • AWS, Google
  • Grid engine

Conference & Lecturer

  • (Lecturer) Biomedical Bigdata Research Workshop - Drug repurposing (National Research Foundation of Korea & KYUNG HEE UNIV.)
  • (Lecturer) Korea BIO 2018 - Professional Course for genomics Link
  • (Lecturer) Korea BIO 2019 - AI & Big data trend in Healthcare
  • (International Conference) CHORUS SEOUL 2019 - AI approach for Genome driven precision care Link

Press

  • Minke whale genome analysis Link
  • Tiger genome analysis Link
  • Cloned dogs genome analysis Link
  • Transgenic cow genome analysis Link
  • DREAM Challenge SECOND PLACE Link

Awards and Honors

  • CTD-squared Pancancer Chemosensitivity DREAM Challenge Final round 2nd PLACE 2020 Link
  • CTD-squared Pancancer Drug Activity DREAM Challenge Final round (SC1) 2nd PLACE 2019 Link

Publication

  • Douglass, E. F. et al. A Community Challenge for Pancancer Drug Mechanism of Action Inference from Perturbational Profile Data. Biorxiv 2020.12.21.423514 (2020) doi:10.1101/2020.12.21.423514.
  • Kim, H., Jeong, S., Wang, Y., Kim, J., Kim, T., Hong, K. (2020). Mutation pattern analysis of the public SARS-CoV-2 genome sequences.pdf Clinical Case Reports Journal
  • Kim, H., Cho, Y., Kim, H., Jho, S., Son, B., Son, B., Choi, J., Choi, J., Kim, S., Kim, S., Lee, B., Lee, B., Bhak, J., Jang, G. (2013). Whole genome comparison of donor and cloned dogs Scientific reports 3(1), 2998. https://dx.doi.org/10.1038/srep02998
  • Yum, S., Lee, S., Kim, H., Choi, W., Park, J., Lee, W., Kim, H., Kim, H., Bae, S., Lee, J., Moon, J., Lee, J., Lee, C., Son, B., Song, S., Ji, S., Kim, S., Jang, G. (2016). Efficient generation of transgenic cattle using the DNA transposon and their analysis by next-generation sequencing Scientific reports 6(1), 1 12. https://dx.doi.org/10.1038/srep27185
  • Yim, H., Cho, Y., Guang, X., Kang, S., Jeong, J., Cha, S., Oh, H., Lee, J., Yang, E., Kwon, K., Kim, Y., Kim, T., Kim, W., Jeon, J., Kim, S., Choi, D., Jho, S., Kim, H., Ko, J., Kim, H., Shin, Y., Jung, H., Zheng, Y., Wang, Z., Chen, Y., Chen, M., Jiang, A., Li, E., Zhang, S., Hou, H., Kim, T., Yu, L., Liu, S., Ahn, K., Cooper, J., Park, S., Hong, C., Jin, W., Kim, H., Park, C., Lee, K., Chun, S., Morin, P., O’Brien, S., Lee, H., Kimura, J., Moon, D., Manica, A., Edwards, J., Kim, B., Kim, S., Wang, J., Bhak, J., Lee, H., Lee, J. (2014). Minke whale genome and aquatic adaptation in cetaceans Nature Genetics 46(1), 88 92. https://dx.doi.org/10.1038/ng.2835
  • Kim, Y., Kim, Y., Park, H., Park, H., Hwang, T., Hwang, T., Lee, S., Lee, S., Choi, M., Choi, M., Jho, S., Hwang, S., Hwang, S., Kim, H., Lee, D., Lee, D., Kim, B., Kim, B., Hong, C., Hong, C., Cho, Y., Cho, Y., Kim, H., Jeong, K., Jeong, K., Seo, M., Seo, M., Yun, H., Yun, H., Kim, S., Kim, S., Kwon, Y., Kwon, Y., Kim, W., Kim, W., Chun, H., Chun, H., Lim, S., Lim, S., Shin, Y., Shin, Y., Choi, I., Choi, I., Kim, Y., Kim, Y., Yoon, H., Yoon, H., Lee, S., Lee, S., Lee, S., Lee, S. (2014). Variation block-based genomics method for crop plants BMC Genomics 15(1), 477. https://dx.doi.org/10.1186/1471-2164-15-477
  • Cho, Y., Hu, L., Hu, L., Hou, H., Hou, H., Lee, H., Lee, H., Xu, J., Xu, J., Kwon, S., Kwon, S., Oh, S., Oh, S., Kim, H., Jho, S., Kim, S., Kim, S., Shin, Y., Shin, Y., Kim, B., Kim, B., Kim, H., Kim, C., Kim, C., Luo, S., Luo, S., Johnson, W., Johnson, W., Koepfli, K., Koepfli, K., Schmidt-Küntzel, A., Schmidt-Küntzel, A., Turner, J., Turner, J., Marker, L., Marker, L., Harper, C., Harper, C., Miller, S., Miller, S., Jacobs, W., Jacobs, W., Bertola, L., Bertola, L., Kim, T., Kim, T., Lee, S., Lee, S., Zhou, Q., Zhou, Q., Jung, H., Jung, H., Xu, X., Xu, X., Gadhvi, P., Gadhvi, P., Xu, P., Xu, P., Xiong, Y., Xiong, Y., Luo, Y., Luo, Y., Pan, S., Pan, S., Gou, C., Gou, C., Chu, X., Chu, X., Zhang, J., Zhang, J., Liu, S., Liu, S., He, J., He, J., Chen, Y., Chen, Y., Yang, L., Yang, L., Yang, Y., Yang, Y., He, J., He, J., Liu, S., Liu, S., Wang, J., Wang, J., Kim, C., Kim, C., Kwak, H., Kwak, H., Kim, J., Kim, J., Hwang, S., Hwang, S., Ko, J., Ko, J., Kim, C., Kim, C., Kim, S., Kim, S., Bayarlkhagva, D., Bayarlkhagva, D., Paek, W., Paek, W., Kim, S., Kim, S., O’Brien, S., O’Brien, S., Wang, J., Wang, J., Bhak, J. (2013). The tiger genome and comparative analysis with lion and snow leopard genomes Nature Communications 4(1), 2433. https://dx.doi.org/10.1038/ncomms3433